@ Ontology Change Report @ First ontology URI: file:///srv/ncbo/share/env/prod/repository/FYPO/159/fypo.obo @ Second ontology URI: file:///srv/ncbo/share/env/prod/repository/FYPO/158/fypo.obo @ File Written at 2013.11.26 at 12:49:32 PST @ Number of classes changed: 70 @ Number of classes added: 0 @Classes modified from previous --- Class Changed: http://www.geneontology.org/go#FYPO_0002233 label: viable elongated vegetative cell population + SubClassOf('viable elongated vegetative cell population' ObjectSomeValueFrom('comprises cells with phenotype' 'viable elongated vegetative cell')) + SubClassOf('viable elongated vegetative cell population' 'viable vegetative cell population with abnormal cell shape') --- Class Changed: http://www.geneontology.org/go#FYPO_0002919 label: abolished histone H3-K36 methylation - EquivalentClasses('abolished histone H3-K36 methylation' ObjectIntersectionOf(PATO_0001558 ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('towards' 'histone H3-K36 methylation')) ) - SubClassOf('abolished histone H3-K36 methylation' ObjectSomeValueFrom('towards' 'histone H3-K36 methylation')) - SubClassOf('abolished histone H3-K36 methylation' 'abnormal histone H3-K36 methylation') - SubClassOf('abolished histone H3-K36 methylation' ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase')) - SubClassOf('abolished histone H3-K36 methylation' 'abolished histone methylation') --- Class Changed: http://www.geneontology.org/go#FYPO_0002075 label: inviable vegetative cell population at high temperature + SubClassOf('inviable vegetative cell population at high temperature' 'inviable cell population at high temperature') + SubClassOf('inviable vegetative cell population at high temperature' 'inviable vegetative cell population') --- Class Changed: http://www.geneontology.org/go#GO_0071894 label: histone H2B conserved C-terminal lysine ubiquitination - SubClassOf('histone H2B conserved C-terminal lysine ubiquitination' 'histone H2B ubiquitination') --- Class Changed: http://www.geneontology.org/go#FYPO_0002149 label: inviable elongated vegetative cell population + SubClassOf('inviable elongated vegetative cell population' ObjectSomeValueFrom('comprises cells with phenotype' 'inviable elongated vegetative cell')) + SubClassOf('inviable elongated vegetative cell population' 'inviable vegetative cell population with abnormal cell shape') --- Class Changed: http://www.geneontology.org/go#FYPO_0002468 label: inviable swollen elongated vegetative cell population + SubClassOf('inviable swollen elongated vegetative cell population' ObjectSomeValueFrom('comprises cells with phenotype' 'inviable swollen elongated vegetative cell')) + SubClassOf('inviable swollen elongated vegetative cell population' 'inviable elongated vegetative cell population') --- Class Changed: http://www.geneontology.org/go#FYPO_0002911 label: inviable after spore germination with swollen elongated germ tube - SubClassOf('inviable after spore germination with swollen elongated germ tube' 'inviable after spore germination with elongated germ tube') - SubClassOf('inviable after spore germination with swollen elongated germ tube' 'inviable swollen elongated vegetative cell') --- Class Changed: http://www.geneontology.org/go#FYPO_0002909 label: decreased protein localization to chromatin during vegetative growth - SubClassOf('decreased protein localization to chromatin during vegetative growth' ObjectSomeValueFrom('inheres_in' 'protein localization to chromatin')) - SubClassOf('decreased protein localization to chromatin during vegetative growth' 'decreased protein localization to chromosome') - SubClassOf('decreased protein localization to chromatin during vegetative growth' 'abnormal protein localization to chromatin during vegetative growth') - EquivalentClasses('decreased protein localization to chromatin during vegetative growth' ObjectIntersectionOf(PATO_0002052 ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'protein localization to chromatin')) ) - SubClassOf('decreased protein localization to chromatin during vegetative growth' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002924 label: decreased cell population growth on maltose carbon source - SubClassOf('decreased cell population growth on maltose carbon source' 'decreased vegetative cell population growth') --- Class Changed: http://www.geneontology.org/go#FYPO_0002201 label: viable stubby vegetative cell population + SubClassOf('viable stubby vegetative cell population' ObjectSomeValueFrom('comprises cells with phenotype' 'viable stubby vegetative cell')) + SubClassOf('viable stubby vegetative cell population' 'viable vegetative cell population') --- Class Changed: http://www.geneontology.org/go#FYPO_0002913 label: increased antisense RNA transcription - SubClassOf('increased antisense RNA transcription' 'increased transcription during vegetative growth') - SubClassOf('increased antisense RNA transcription' ObjectSomeValueFrom('inheres_in' 'antisense RNA transcription')) - EquivalentClasses('increased antisense RNA transcription' ObjectIntersectionOf(PATO_0002051 ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'antisense RNA transcription')) ) - SubClassOf('increased antisense RNA transcription' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002922 label: abolished histone H2B-K119 ubiquitination - SubClassOf('abolished histone H2B-K119 ubiquitination' 'abolished protein ubiquitination') - EquivalentClasses('abolished histone H2B-K119 ubiquitination' ObjectIntersectionOf(PATO_0001558 ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('towards' 'histone H2B conserved C-terminal lysine ubiquitination')) ) - SubClassOf('abolished histone H2B-K119 ubiquitination' 'abnormal histone ubiquitination') - SubClassOf('abolished histone H2B-K119 ubiquitination' ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase')) - SubClassOf('abolished histone H2B-K119 ubiquitination' ObjectSomeValueFrom('towards' 'histone H2B conserved C-terminal lysine ubiquitination')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002218 label: inviable vegetative cell population after spore germination, normal unseptated germ tube morphology + SubClassOf('inviable vegetative cell population after spore germination, normal unseptated germ tube morphology' ObjectSomeValueFrom('comprises cells with phenotype' 'inviable after spore germination with normal, unseptated germ tube morphology')) + SubClassOf('inviable vegetative cell population after spore germination, normal unseptated germ tube morphology' 'inviable vegetative cell population after spore germination') --- Class Changed: http://www.geneontology.org/go#FYPO_0002231 label: inviable microcolony, curved cells + SubClassOf('inviable microcolony, curved cells' 'inviable curved vegetative cell population') --- Class Changed: http://www.geneontology.org/go#FYPO_0002210 label: inviable microcolony, bottle-shaped cells + SubClassOf('inviable microcolony, bottle-shaped cells' 'inviable vegetative cell population with abnormal cell shape') --- Class Changed: http://www.geneontology.org/go#FYPO_0002422 label: inviable vegetative cell population after spore germination, single or double cell division, abnormal cell shape + SubClassOf('inviable vegetative cell population after spore germination, single or double cell division, abnormal cell shape' 'inviable vegetative cell population after spore germination') + SubClassOf('inviable vegetative cell population after spore germination, single or double cell division, abnormal cell shape' ObjectSomeValueFrom('comprises cells with phenotype' 'inviable after spore germination, single or double cell division, abnormal cell shape')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002385 label: decreased protein localization to heterochromatin + SubClassOf('decreased protein localization to heterochromatin' 'decreased protein localization to chromosome') - SubClassOf('decreased protein localization to heterochromatin' 'decreased protein localization to chromatin during vegetative growth') --- Class Changed: http://www.geneontology.org/go#FYPO_0002433 label: inviable vegetative cell population with abnormal cell shape + SubClassOf('inviable vegetative cell population with abnormal cell shape' 'inviable vegetative cell population with abnormal cell morphology') + SubClassOf('inviable vegetative cell population with abnormal cell shape' ObjectSomeValueFrom('comprises cells with phenotype' 'inviable vegetative cell with abnormal cell shape')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002910 label: decreased protein localization to chromatin at transcribed regions during vegetative growth - SubClassOf('decreased protein localization to chromatin at transcribed regions during vegetative growth' 'abnormal protein localization to chromatin during vegetative growth') --- Class Changed: http://www.geneontology.org/go#FYPO_0002905 label: normal telomere maintenance - SubClassOf('normal telomere maintenance' 'regulation phenotype during vegetative growth') - SubClassOf('normal telomere maintenance' ObjectSomeValueFrom('inheres_in' 'telomere maintenance')) - SubClassOf('normal telomere maintenance' ObjectSomeValueFrom('qualifier' PATO_0000461)) - SubClassOf('normal telomere maintenance' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) - SubClassOf('normal telomere maintenance' 'cellular component organization phenotype') - SubClassOf('normal telomere maintenance' 'normal metabolic process during vegetative growth') - EquivalentClasses('normal telomere maintenance' ObjectIntersectionOf(PATO_0000001 ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'telomere maintenance') ObjectSomeValueFrom('qualifier' PATO_0000461)) ) - SubClassOf('normal telomere maintenance' 'DNA metabolism phenotype during vegetative growth') --- Class Changed: http://www.geneontology.org/go#FYPO_0002407 label: viable curved stubby vegetative cell population + SubClassOf('viable curved stubby vegetative cell population' ObjectSomeValueFrom('comprises cells with phenotype' 'viable curved stubby vegetative cell')) + SubClassOf('viable curved stubby vegetative cell population' 'viable curved vegetative cell population') --- Class Changed: http://www.geneontology.org/go#FYPO_0002206 label: inviable swollen spore population + SubClassOf('inviable swollen spore population' ObjectSomeValueFrom('comprises cells with phenotype' 'inviable swollen spore')) + SubClassOf('inviable swollen spore population' 'inviable spore population') --- Class Changed: http://www.geneontology.org/go#FYPO_0002202 label: inviable stubby vegetative cell population + SubClassOf('inviable stubby vegetative cell population' 'inviable vegetative cell population with abnormal cell shape') + SubClassOf('inviable stubby vegetative cell population' ObjectSomeValueFrom('comprises cells with phenotype' 'inviable stubby vegetative cell')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002214 label: inviable vegetative cell population after spore germination, abnormal germ tube morphology + SubClassOf('inviable vegetative cell population after spore germination, abnormal germ tube morphology' ObjectSomeValueFrom('comprises cells with phenotype' 'inviable after spore germination, without cell division, with abnormal germ tube morphology')) + SubClassOf('inviable vegetative cell population after spore germination, abnormal germ tube morphology' 'inviable vegetative cell population after spore germination') + SubClassOf('inviable vegetative cell population after spore germination, abnormal germ tube morphology' ObjectSomeValueFrom('comprises cells with phenotype' 'inviable after spore germination with abnormal germ tube morphology')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002213 label: inviable vegetative cell population after spore germination, elongated curved germ tubes + SubClassOf('inviable vegetative cell population after spore germination, elongated curved germ tubes' 'inviable vegetative cell population after spore germination, elongated germ tubes') + SubClassOf('inviable vegetative cell population after spore germination, elongated curved germ tubes' ObjectSomeValueFrom('comprises cells with phenotype' 'inviable after spore germination, without cell division, with elongated, curved germ tube')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002186 label: inviable microcolony, small cells + SubClassOf('inviable microcolony, small cells' 'inviable small vegetative cell population') --- Class Changed: http://www.geneontology.org/go#FYPO_0002923 label: normal histone H2B-K119 ubiquitination - EquivalentClasses('normal histone H2B-K119 ubiquitination' ObjectIntersectionOf(PATO_0000001 ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'histone H2B conserved C-terminal lysine ubiquitination') ObjectSomeValueFrom('qualifier' PATO_0000461)) ) - SubClassOf('normal histone H2B-K119 ubiquitination' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) - SubClassOf('normal histone H2B-K119 ubiquitination' 'normal protein ubiquitination') - SubClassOf('normal histone H2B-K119 ubiquitination' ObjectSomeValueFrom('qualifier' PATO_0000461)) - SubClassOf('normal histone H2B-K119 ubiquitination' 'normal histone modification') - SubClassOf('normal histone H2B-K119 ubiquitination' ObjectSomeValueFrom('inheres_in' 'histone H2B conserved C-terminal lysine ubiquitination')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002272 label: inviable microcolony, abnormal cell morphology + SubClassOf('inviable microcolony, abnormal cell morphology' 'inviable vegetative cell population with abnormal cell morphology') --- Class Changed: http://www.geneontology.org/go#FYPO_0002915 label: abnormal RNA splicing - SubClassOf('abnormal RNA splicing' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) - EquivalentClasses('abnormal RNA splicing' ObjectIntersectionOf(PATO_0000001 ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'RNA splicing, via transesterification reactions with bulged adenosine as nucleophile') ObjectSomeValueFrom('qualifier' PATO_0000460)) ) - SubClassOf('abnormal RNA splicing' ObjectSomeValueFrom('qualifier' PATO_0000460)) - SubClassOf('abnormal RNA splicing' ObjectSomeValueFrom('inheres_in' 'RNA splicing, via transesterification reactions with bulged adenosine as nucleophile')) - SubClassOf('abnormal RNA splicing' 'abnormal RNA processing') --- Class Changed: http://www.geneontology.org/go#FYPO_0002292 label: viable bottle-shaped vegetative cell population + SubClassOf('viable bottle-shaped vegetative cell population' 'viable vegetative cell population with abnormal cell shape') + SubClassOf('viable bottle-shaped vegetative cell population' ObjectSomeValueFrom('comprises cells with phenotype' 'viable bottle-shaped vegetative cell')) --- Class Changed: http://www.geneontology.org/go#SO_0000605 label: intergenic_region - SubClassOf('intergenic_region' 'biological_region') --- Class Changed: http://www.geneontology.org/go#FYPO_0002921 label: abnormal histone ubiquitination - SubClassOf('abnormal histone ubiquitination' 'abnormal protein ubiquitination') - SubClassOf('abnormal histone ubiquitination' ObjectSomeValueFrom('qualifier' PATO_0000460)) - SubClassOf('abnormal histone ubiquitination' ObjectSomeValueFrom('inheres_in' 'histone ubiquitination')) - SubClassOf('abnormal histone ubiquitination' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) - EquivalentClasses('abnormal histone ubiquitination' ObjectIntersectionOf(PATO_0000001 ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'histone ubiquitination') ObjectSomeValueFrom('qualifier' PATO_0000460)) ) - SubClassOf('abnormal histone ubiquitination' 'abnormal histone modification') --- Class Changed: http://www.geneontology.org/go#GO_0016574 label: histone ubiquitination - SubClassOf('histone ubiquitination' 'histone modification') - SubClassOf('histone ubiquitination' 'protein ubiquitination') --- Class Changed: http://www.geneontology.org/go#FYPO_0002211 label: inviable vegetative cell population after spore germination, elongated germ tubes + SubClassOf('inviable vegetative cell population after spore germination, elongated germ tubes' 'inviable vegetative cell population after spore germination, abnormal germ tube morphology') + SubClassOf('inviable vegetative cell population after spore germination, elongated germ tubes' ObjectSomeValueFrom('comprises cells with phenotype' 'inviable after spore germination with elongated germ tube')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002198 label: viable vegetative cell population with abnormal cell shape + SubClassOf('viable vegetative cell population with abnormal cell shape' ObjectSomeValueFrom('comprises cells with phenotype' 'viable vegetative cell with abnormal cell shape')) + SubClassOf('viable vegetative cell population with abnormal cell shape' 'viable vegetative cell population') --- Class Changed: http://www.geneontology.org/go#FYPO_0000299 label: inviable microcolony + SubClassOf('inviable microcolony' ObjectSomeValueFrom('comprises cells with phenotype' 'inviable cell')) + SubClassOf('inviable microcolony' 'inviable cell population') - SubClassOf('inviable microcolony' 'inviable vegetative cell population') - SubClassOf('inviable microcolony' ObjectSomeValueFrom('comprises cells with phenotype' 'inviable vegetative cell')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002203 label: inviable microcolony, stubby cells + SubClassOf('inviable microcolony, stubby cells' 'inviable stubby vegetative cell population') --- Class Changed: http://www.geneontology.org/go#FYPO_0002920 label: normal histone H3-K36 methylation - SubClassOf('normal histone H3-K36 methylation' 'normal histone methylation') - SubClassOf('normal histone H3-K36 methylation' ObjectSomeValueFrom('inheres_in' 'histone H3-K36 methylation')) - EquivalentClasses('normal histone H3-K36 methylation' ObjectIntersectionOf(PATO_0000001 ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'histone H3-K36 methylation') ObjectSomeValueFrom('qualifier' PATO_0000461)) ) - SubClassOf('normal histone H3-K36 methylation' ObjectSomeValueFrom('qualifier' PATO_0000461)) - SubClassOf('normal histone H3-K36 methylation' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002925 label: decreased protein localization to M26 site - SubClassOf('decreased protein localization to M26 site' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) - EquivalentClasses('decreased protein localization to M26 site' ObjectIntersectionOf(PATO_0002052 ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'protein localization to chromosome') ObjectSomeValueFrom('occurs_at' 'M26_binding_site')) ) - SubClassOf('decreased protein localization to M26 site' ObjectSomeValueFrom('occurs_at' 'M26_binding_site')) - SubClassOf('decreased protein localization to M26 site' 'decreased protein localization to centromere') - SubClassOf('decreased protein localization to M26 site' ObjectSomeValueFrom('inheres_in' 'protein localization to chromosome')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002419 label: inviable vegetative cell population after spore germination, without cell division + SubClassOf('inviable vegetative cell population after spore germination, without cell division' 'inviable vegetative cell population after spore germination') + SubClassOf('inviable vegetative cell population after spore germination, without cell division' ObjectSomeValueFrom('comprises cells with phenotype' 'inviable after spore germination, without cell division')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002217 label: viable curved elongated vegetative cell population + SubClassOf('viable curved elongated vegetative cell population' 'viable curved vegetative cell population') + SubClassOf('viable curved elongated vegetative cell population' ObjectSomeValueFrom('comprises cells with phenotype' 'viable curved elongated vegetative cell')) --- Class Changed: http://www.geneontology.org/go#SO_0001900 label: M26_binding_site - SubClassOf('M26_binding_site' 'DNA_motif') --- Class Changed: http://www.geneontology.org/go#FYPO_0002918 label: abnormal histone H3-K36 methylation - EquivalentClasses('abnormal histone H3-K36 methylation' ObjectIntersectionOf(PATO_0000001 ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'histone H3-K36 methylation') ObjectSomeValueFrom('qualifier' PATO_0000460)) ) - SubClassOf('abnormal histone H3-K36 methylation' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) - SubClassOf('abnormal histone H3-K36 methylation' ObjectSomeValueFrom('qualifier' PATO_0000460)) - SubClassOf('abnormal histone H3-K36 methylation' ObjectSomeValueFrom('inheres_in' 'histone H3-K36 methylation')) - SubClassOf('abnormal histone H3-K36 methylation' 'abnormal histone methylation') --- Class Changed: http://www.geneontology.org/go#FYPO_0002412 label: inviable curved elongated vegetative cell population + SubClassOf('inviable curved elongated vegetative cell population' ObjectSomeValueFrom('comprises cells with phenotype' 'inviable curved elongated vegetative cell')) + SubClassOf('inviable curved elongated vegetative cell population' 'inviable curved vegetative cell population') + SubClassOf('inviable curved elongated vegetative cell population' 'inviable elongated vegetative cell population') --- Class Changed: http://www.geneontology.org/go#FYPO_0002378 label: viable swollen vegetative cell population + SubClassOf('viable swollen vegetative cell population' 'viable vegetative cell population') + SubClassOf('viable swollen vegetative cell population' ObjectSomeValueFrom('comprises cells with phenotype' 'viable swollen vegetative cell')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002917 label: abolished histone H3-K4 methylation - EquivalentClasses('abolished histone H3-K4 methylation' ObjectIntersectionOf(PATO_0001558 ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('towards' 'histone H3-K4 methylation')) ) - SubClassOf('abolished histone H3-K4 methylation' 'abolished histone methylation') - SubClassOf('abolished histone H3-K4 methylation' ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase')) - SubClassOf('abolished histone H3-K4 methylation' 'abnormal histone H3-K4 methylation') - SubClassOf('abolished histone H3-K4 methylation' ObjectSomeValueFrom('towards' 'histone H3-K4 methylation')) - SubClassOf('abolished histone H3-K4 methylation' 'abnormal histone H3-K36 methylation') --- Class Changed: http://www.geneontology.org/go#FYPO_0002454 label: inviable vegetative cell population with abnormal cell morphology + SubClassOf('inviable vegetative cell population with abnormal cell morphology' 'inviable vegetative cell population') + SubClassOf('inviable vegetative cell population with abnormal cell morphology' ObjectSomeValueFrom('comprises cells with phenotype' 'inviable vegetative cell with abnormal cell morphology')) --- Class Changed: http://www.geneontology.org/go#GO_0033523 label: histone H2B ubiquitination - SubClassOf('histone H2B ubiquitination' 'histone ubiquitination') --- Class Changed: http://www.geneontology.org/go#FYPO_0002465 label: inviable spore population with abnormal spore shape + SubClassOf('inviable spore population with abnormal spore shape' 'inviable spore population') + SubClassOf('inviable spore population with abnormal spore shape' ObjectSomeValueFrom('has_part' 'abolished spore germination')) + SubClassOf('inviable spore population with abnormal spore shape' ObjectSomeValueFrom('comprises cells with phenotype' 'abnormal spore shape')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002916 label: increased RNA splicing - SubClassOf('increased RNA splicing' ObjectSomeValueFrom('inheres_in' 'RNA splicing, via transesterification reactions with bulged adenosine as nucleophile')) - SubClassOf('increased RNA splicing' 'abnormal RNA splicing') - SubClassOf('increased RNA splicing' PATO_0002051) - EquivalentClasses('increased RNA splicing' ObjectIntersectionOf(PATO_0002051 ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'RNA splicing, via transesterification reactions with bulged adenosine as nucleophile')) ) - SubClassOf('increased RNA splicing' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002413 label: inviable curved vegetative cell population + SubClassOf('inviable curved vegetative cell population' ObjectSomeValueFrom('comprises cells with phenotype' 'inviable curved vegetative cell')) + SubClassOf('inviable curved vegetative cell population' 'inviable vegetative cell population with abnormal cell shape') --- Class Changed: http://www.geneontology.org/go#FYPO_0002372 label: viable spheroid vegetative cell population + SubClassOf('viable spheroid vegetative cell population' ObjectSomeValueFrom('comprises cells with phenotype' 'viable spheroid vegetative cell')) + SubClassOf('viable spheroid vegetative cell population' 'viable vegetative cell population with abnormal cell shape') --- Class Changed: http://www.geneontology.org/go#FYPO_0002188 label: inviable microcolony, normal volume spheroid cells + SubClassOf('inviable microcolony, normal volume spheroid cells' 'inviable vegetative cell population with abnormal cell shape') --- Class Changed: http://www.geneontology.org/go#FYPO_0002907 label: circularized chromosome during mitotic G1 phase - SubClassOf('circularized chromosome during mitotic G1 phase' 'circularized chromosome') --- Class Changed: http://www.geneontology.org/go#FYPO_0002912 label: inviable after spore germination, without cell division, elongated multinucleate cell - SubClassOf('inviable after spore germination, without cell division, elongated multinucleate cell' 'inviable after spore germination, without cell division') --- Class Changed: http://www.geneontology.org/go#GO_0009300 label: antisense RNA transcription - SubClassOf('antisense RNA transcription' 'transcription, DNA-templated') - SubClassOf('antisense RNA transcription' 'antisense RNA metabolic process') --- Class Changed: http://www.geneontology.org/go#FYPO_0002262 label: inviable after spore germination, multiple cell divisions, elongated cell - SubClassOf('inviable after spore germination, multiple cell divisions, elongated cell' 'inviable elongated vegetative cell') --- Class Changed: http://www.geneontology.org/go#GO_0010452 label: histone H3-K36 methylation - SubClassOf('histone H3-K36 methylation' 'histone lysine methylation') --- Class Changed: http://www.geneontology.org/go#FYPO_0002152 label: inviable small vegetative cell population + SubClassOf('inviable small vegetative cell population' ObjectSomeValueFrom('comprises cells with phenotype' 'inviable small vegetative cell')) + SubClassOf('inviable small vegetative cell population' 'inviable vegetative cell population with abnormal cell morphology') --- Class Changed: http://www.geneontology.org/go#FYPO_0002914 label: increased intergenic transcription - SubClassOf('increased intergenic transcription' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) - SubClassOf('increased intergenic transcription' ObjectSomeValueFrom('occurs_at' 'intergenic_region')) - SubClassOf('increased intergenic transcription' ObjectSomeValueFrom('inheres_in' 'transcription, DNA-templated')) - EquivalentClasses('increased intergenic transcription' ObjectIntersectionOf(PATO_0002051 ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'transcription, DNA-templated') ObjectSomeValueFrom('occurs_at' 'intergenic_region')) ) - SubClassOf('increased intergenic transcription' 'increased transcription during vegetative growth') --- Class Changed: http://www.geneontology.org/go#FYPO_0002209 label: inviable swollen spore population with abnormal spore shape + SubClassOf('inviable swollen spore population with abnormal spore shape' ObjectSomeValueFrom('has_part' 'spore germination abolished, swollen spore with abnormal shape')) + SubClassOf('inviable swollen spore population with abnormal spore shape' 'inviable spore population with abnormal spore shape') + SubClassOf('inviable swollen spore population with abnormal spore shape' ObjectSomeValueFrom('comprises cells with phenotype' 'inviable swollen spore with abnormal shape')) + SubClassOf('inviable swollen spore population with abnormal spore shape' 'inviable swollen spore population') --- Class Changed: http://www.geneontology.org/go#FYPO_0002153 label: viable small vegetative cell population + SubClassOf('viable small vegetative cell population' 'viable vegetative cell population') + SubClassOf('viable small vegetative cell population' ObjectSomeValueFrom('comprises cells with phenotype' 'viable small vegetative cell')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002408 label: viable curved stubby septated vegetative cell population + SubClassOf('viable curved stubby septated vegetative cell population' 'viable curved stubby vegetative cell population') + SubClassOf('viable curved stubby septated vegetative cell population' ObjectSomeValueFrom('comprises cells with phenotype' 'viable curved stubby septated vegetative cell')) --- Class Changed: http://www.geneontology.org/go#GO_0042868 label: antisense RNA metabolic process - SubClassOf('antisense RNA metabolic process' 'ncRNA metabolic process') --- Class Changed: http://www.geneontology.org/go#FYPO_0002195 label: normal morphology viable vegetative cell population + SubClassOf('normal morphology viable vegetative cell population' ObjectSomeValueFrom('comprises cells with phenotype' 'viable vegetative cell with normal cell morphology')) + SubClassOf('normal morphology viable vegetative cell population' 'viable vegetative cell population') --- Class Changed: http://www.geneontology.org/go#FYPO_0002216 label: viable curved vegetative cell population + SubClassOf('viable curved vegetative cell population' 'viable vegetative cell population with abnormal cell shape') + SubClassOf('viable curved vegetative cell population' ObjectSomeValueFrom('comprises cells with phenotype' 'viable curved vegetative cell')) --- Class Changed: http://www.geneontology.org/go#FYPO_0000189 label: abnormal mRNA splicing, via spliceosome + SubClassOf('abnormal mRNA splicing, via spliceosome' 'abnormal RNA processing') - SubClassOf('abnormal mRNA splicing, via spliceosome' 'abnormal RNA splicing') --- Class Changed: http://www.geneontology.org/go#FYPO_0002225 label: inviable microcolony, elongated cells + SubClassOf('inviable microcolony, elongated cells' 'inviable elongated vegetative cell population') --- Class Changed: http://www.geneontology.org/go#FYPO_0002908 label: increased transcription at telomere - SubClassOf('increased transcription at telomere' 'increased transcription during vegetative growth') - SubClassOf('increased transcription at telomere' ObjectSomeValueFrom('occurs_at' 'telomere')) - SubClassOf('increased transcription at telomere' ObjectSomeValueFrom('inheres_in' 'transcription, DNA-templated')) - EquivalentClasses('increased transcription at telomere' ObjectIntersectionOf(PATO_0002051 ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'transcription, DNA-templated') ObjectSomeValueFrom('occurs_at' 'telomere')) ) - SubClassOf('increased transcription at telomere' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) --- Class Changed: http://www.geneontology.org/go#GO_0006406 label: mRNA export from nucleus - SubClassOf('mRNA export from nucleus' ObjectSomeValueFrom('part_of' 'gene expression')) @New Classes